Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015917579.1_cds_XP_016467158.1_59933
CDS Infomation

[gene=LOC107789804] [db_xref=GeneID:107789804] [protein=DEAD-box ATP-dependent RNA helicase 5-like] [protein_id=XP_016467158.1] [location=complement(join(13592..13687,15734..15826,15931..16095,17105..17198,17406..17474,18730..18797,18998..19054,19132..19217,20254..20332,20774..20854,21080..21187,22817..22935,23021..23489))] [gbkey=CDS]
Sequence

ATGGTAGCAAAACAGTTAGCTGATGACGAACCACAAAAAACCCTCAAGGGTTCTCAATCC
AAATCCCATAAGAAAAGACATAAGAGAAAGCTCGAAGACCCTGAACCTGAAGAAGTTGCT
GTTATAGAGTCCAAGAAAGAGAAACAGAAGAAGAGAAAGCAGAAACAGAACCAAGAAGAA
GAAGGGTCTATTGTAAACAGTGAAAATCTTAGTGGGTCTAATGGAAAGGTTGAAACTTTT
AACGGGCCAGCTGAGTTTTCTGAAAAAAGTAGTACAAATGTGGTGGTAACTGGTAAGGAT
GCTAATGAGTCAAAGTACAAAGCTTTAGCAAAATTTGTGGATTCAGGGCTTCCAAGTGAT
GTGTTAGATTGTTGCAAGAATTTTGAGAAACCATCACCAATTCAATCACATTCATGGCCT
TTTCTTTTAGATGGCCGTGATTTCATTGGAATTGCCAAAACTGGGTCAGGTAAGACTTTG
GCTTTTGGTATTCCGGCTATTATGCATGTCCTGAGCAAGAGAAAGAGTAAAAAGTCTAAG
AATCCGCTTTGCCTCGTGCTTTCGCCTACAAGGGAGCTAGCTCAACAAATATCAGATGTT
CTCTGCGATGCTGGGAAGCCTACTGGCGTGCAGTCAGTTTGTCTATATGGTGGAGTCGAT
AAGCATCATCAAAAAGCTTCTCTTAAATCTGGTGTGGATATTGTTATTGGAACCCCTGGT
CGTTTGCAGGATATGATGGAAATGGGAGCATGCAACTTAAAAGAGGTTTCTTTTGTGGTG
CTAGATGAAGCTGATCGGATGCTCGATTTAGGTTTTGAACCCGCTGTCCGTGCCATTTTG
AGCCAAACATGCTCTGTTCGACAATCGGTTATGTTCAGTGCTACATGGCCTCCGGCTGTT
CATCAATTAGCTCAAGAATTCATGGATCCTCATCCAATCAAGGTAGTTGTAGGTTCAGAA
GATTTGGCTGCCAACCACGATGTCATGCAAATTGTCGAGGTCTTGGAAGATAGAGCCCGT
GATGAGCGTTTACAGTGCTTGCTGGAAAAATACCACAAGTCTAGAAAGAACAGAGTATTG
GTTTTTGTTTTGTACAAGAAGGAAGCATCTCGGGTTGAAATTATGCTACAGAAAAGGGGT
TGGAAAGTTGTGTCCATTAGCGGTGACAAGCAACAACATGCTCGTACTAAGGCGTTGTCA
CTCTTTAAGGATGGAAGCTGTCCTTTAATGATAGCTACTGATGTAGCTGCTCGAGGTCTA
GATATCCCGGATGTTGAAGTTGTGATAAATTATAGTTTTCCTTTGACGACAGAGGATTAT
GTTCATAGAATTGGAAGAACTGGACGGGCTGGTAAAAAAGGTGTAGCTCATACATTCTTC
ACTAAGGACAACAAGGGACTTTCTGGGGAGTTGATAAATGTCCTCAGAGAAGCTGGACAG
GTTGTTCCAGCTGCCCTTCTTAATTTTGGAACCCATGTAAAGAAAAAGGAATCAAAGCTC
TATGGTGCTCATTTTAGAGAAATAGATGCAAATGCTCCAAAGGCTACAAAAATTAAATTT
GACAATTCTGATGAGGAAGATTGA

Peptide Sequence

PEP ID

XP_016467158.1
PEP Infomation

PREDICTED: DEAD-box ATP-dependent RNA helicase 5-like [Nicotiana tabacum]
Sequence

MVAKQLADDEPQKTLKGSQSKSHKKRHKRKLEDPEPEEVAVIESKKEKQKKRKQKQNQEE
EGSIVNSENLSGSNGKVETFNGPAEFSEKSSTNVVVTGKDANESKYKALAKFVDSGLPSD
VLDCCKNFEKPSPIQSHSWPFLLDGRDFIGIAKTGSGKTLAFGIPAIMHVLSKRKSKKSK
NPLCLVLSPTRELAQQISDVLCDAGKPTGVQSVCLYGGVDKHHQKASLKSGVDIVIGTPG
RLQDMMEMGACNLKEVSFVVLDEADRMLDLGFEPAVRAILSQTCSVRQSVMFSATWPPAV
HQLAQEFMDPHPIKVVVGSEDLAANHDVMQIVEVLEDRARDERLQCLLEKYHKSRKNRVL
VFVLYKKEASRVEIMLQKRGWKVVSISGDKQQHARTKALSLFKDGSCPLMIATDVAARGL
DIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTKDNKGLSGELINVLREAGQ
VVPAALLNFGTHVKKKESKLYGAHFREIDANAPKATKIKFDNSDEED

Transcript Sequence

Gene sequence data has not been registered.